PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN37042.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family HSF
Protein Properties Length: 353aa    MW: 40084.2 Da    PI: 4.8401
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN37042.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind111.94.4e-35431342102
                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS
  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 
                   Fl+k+++++ed+++++++sws   nsfvv+d+++f+ ++Lp+yFkh nf+SF+RQLn+YgF+kv+ ++         weF+++ F +g+++ll++ik
    KHN37042.1  43 FLSKIFDMVEDPSTDSIVSWSMARNSFVVWDSHKFSAHILPRYFKHANFSSFIRQLNTYGFRKVDPDK---------WEFANEGFLAGQRHLLKTIK 130
                   9********************999*****************************************999.........******************** PP

                   XXXX CS
  HSF_DNA-bind  99 rkks 102
                   r+++
    KHN37042.1 131 RRRN 134
                   *987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.102.5E-3736127IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467857.75E-3339132IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004152.4E-5839132IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004478.4E-3143132IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.2E-184366IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.2E-188193IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS00434082106IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.2E-1894106IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009644Biological Processresponse to high light intensity
GO:0010200Biological Processresponse to chitin
GO:0010286Biological Processheat acclimation
GO:0034605Biological Processcellular response to heat
GO:0034620Biological Processcellular response to unfolded protein
GO:0042542Biological Processresponse to hydrogen peroxide
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0071456Biological Processcellular response to hypoxia
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 353 aa     Download sequence    Send to blast
MERIRVKEEE AMTCGGGGSS SSSFISPQAQ PMEGLHEVGP PPFLSKIFDM VEDPSTDSIV  60
SWSMARNSFV VWDSHKFSAH ILPRYFKHAN FSSFIRQLNT YGFRKVDPDK WEFANEGFLA  120
GQRHLLKTIK RRRNVSHSNQ QKGGSGACVE VGKFGLEGEL ERLKRDRNIL MAEIVRLRHQ  180
QLNSRDQLSA MEARMQATEK KQQQMMSFLA KALSNPSFMQ QLVHKTPQSR EVLLGVEINR  240
KRRLPACPSV ENLQQDNQDL ATMETDMDTF FAPAYDNEFG NEIDEPASIL VEDSILEDFL  300
NKDLITGNPE DEVIIGDCTQ VDVPMEDLVA NPDDWSEQLQ DLVDHMDYLG SKP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B6e-254113227129Heat shock factor protein 1
5d5v_B6e-254113227129Heat shock factor protein 1
5d5v_D6e-254113227129Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1125131LKTIKRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT0311610.0KT031161.1 Glycine max clone HN_CCL_33 heat shock transcription factor (Glyma14g11030.1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003550266.10.0PREDICTED: heat stress transcription factor A-2-like
SwissprotO809821e-126HSFA2_ARATH; Heat stress transcription factor A-2
TrEMBLA0A0B2RYV40.0A0A0B2RYV4_GLYSO; Heat stress transcription factor A-2
STRINGGLYMA17G34540.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF82253143
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G26150.11e-127heat shock transcription factor A2
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]